J6_8WHX_001

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GC*GGAAC*GGAAGAGAAAA*UGAUU*AGGAUG*CUGAAUAC

Length

37 nucleotides

Bulged bases

8WHX|1|A|A|222, 8WHX|1|A|U|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8WHX|1|A|G|42
8WHX|1|A|C|43
*
8WHX|1|A|G|178
8WHX|1|A|G|179
8WHX|1|A|A|180
8WHX|1|A|A|181
8WHX|1|A|C|182
*
8WHX|1|A|G|213
8WHX|1|A|G|214
8WHX|1|A|A|215
8WHX|1|A|A|216
8WHX|1|A|G|217
8WHX|1|A|A|218
8WHX|1|A|G|219
8WHX|1|A|A|220
8WHX|1|A|A|221
8WHX|1|A|A|222
8WHX|1|A|A|223
*
8WHX|1|A|U|231
8WHX|1|A|G|232
8WHX|1|A|A|233
8WHX|1|A|U|234
8WHX|1|A|U|235
*
8WHX|1|A|A|262
8WHX|1|A|G|263
8WHX|1|A|G|264
8WHX|1|A|A|265
8WHX|1|A|U|266
8WHX|1|A|G|267
*
8WHX|1|A|C|514
8WHX|1|A|U|515
8WHX|1|A|G|516
8WHX|1|A|A|517
8WHX|1|A|A|518
8WHX|1|A|U|519
8WHX|1|A|A|520
8WHX|1|A|C|521

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34