J6_8WIB_001

3D structure

PDB id

8WIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GC*GGAAC*GGAAGAGAAAA*UGAUU*AGGAUG*CUGAAUAC

Length

37 nucleotides

Bulged bases

8WIB|1|A|A|222, 8WIB|1|A|U|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8WIB|1|A|G|42
8WIB|1|A|C|43
*
8WIB|1|A|G|178
8WIB|1|A|G|179
8WIB|1|A|A|180
8WIB|1|A|A|181
8WIB|1|A|C|182
*
8WIB|1|A|G|213
8WIB|1|A|G|214
8WIB|1|A|A|215
8WIB|1|A|A|216
8WIB|1|A|G|217
8WIB|1|A|A|218
8WIB|1|A|G|219
8WIB|1|A|A|220
8WIB|1|A|A|221
8WIB|1|A|A|222
8WIB|1|A|A|223
*
8WIB|1|A|U|231
8WIB|1|A|G|232
8WIB|1|A|A|233
8WIB|1|A|U|234
8WIB|1|A|U|235
*
8WIB|1|A|A|262
8WIB|1|A|G|263
8WIB|1|A|G|264
8WIB|1|A|A|265
8WIB|1|A|U|266
8WIB|1|A|G|267
*
8WIB|1|A|C|514
8WIB|1|A|U|515
8WIB|1|A|G|516
8WIB|1|A|A|517
8WIB|1|A|A|518
8WIB|1|A|U|519
8WIB|1|A|A|520
8WIB|1|A|C|521

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34