J6_8WIC_001

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GC*GGAAC*GGAAGAGAAAA*UGAUU*AGGAUG*CUGAAUAC

Length

37 nucleotides

Bulged bases

8WIC|1|A|A|222, 8WIC|1|A|U|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8WIC|1|A|G|42
8WIC|1|A|C|43
*
8WIC|1|A|G|178
8WIC|1|A|G|179
8WIC|1|A|A|180
8WIC|1|A|A|181
8WIC|1|A|C|182
*
8WIC|1|A|G|213
8WIC|1|A|G|214
8WIC|1|A|A|215
8WIC|1|A|A|216
8WIC|1|A|G|217
8WIC|1|A|A|218
8WIC|1|A|G|219
8WIC|1|A|A|220
8WIC|1|A|A|221
8WIC|1|A|A|222
8WIC|1|A|A|223
*
8WIC|1|A|U|231
8WIC|1|A|G|232
8WIC|1|A|A|233
8WIC|1|A|U|234
8WIC|1|A|U|235
*
8WIC|1|A|A|262
8WIC|1|A|G|263
8WIC|1|A|G|264
8WIC|1|A|A|265
8WIC|1|A|U|266
8WIC|1|A|G|267
*
8WIC|1|A|C|514
8WIC|1|A|U|515
8WIC|1|A|G|516
8WIC|1|A|A|517
8WIC|1|A|A|518
8WIC|1|A|U|519
8WIC|1|A|A|520
8WIC|1|A|C|521

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34