J6_8XT0_002
3D structure
- PDB id
- 8XT0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUUA*UUCG*CU*AGCA*UCAAUUGAUCC*GACCAACGGAACAA
- Length
- 39 nucleotides
- Bulged bases
- 8XT0|1|L1|U|1069, 8XT0|1|L1|U|1225, 8XT0|1|L1|G|1246, 8XT0|1|L1|A|1248
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8XT0|1|L1|U|1067
8XT0|1|L1|U|1068
8XT0|1|L1|U|1069
8XT0|1|L1|A|1070
*
8XT0|1|L1|U|1137
8XT0|1|L1|U|1138
8XT0|1|L1|C|1139
8XT0|1|L1|G|1140
*
8XT0|1|L1|C|1152
8XT0|1|L1|U|1153
*
8XT0|1|L1|A|1175
8XT0|1|L1|G|1176
8XT0|1|L1|C|1177
8XT0|1|L1|A|1178
*
8XT0|1|L1|U|1220
8XT0|1|L1|C|1221
8XT0|1|L1|A|1222
8XT0|1|L1|A|1223
8XT0|1|L1|U|1224
8XT0|1|L1|U|1225
8XT0|1|L1|G|1226
8XT0|1|L1|A|1227
8XT0|1|L1|U|1228
8XT0|1|L1|C|1229
8XT0|1|L1|C|1230
*
8XT0|1|L1|G|1239
8XT0|1|L1|A|1240
8XT0|1|L1|C|1241
8XT0|1|L1|C|1242
8XT0|1|L1|A|1243
8XT0|1|L1|A|1244
8XT0|1|L1|C|1245
8XT0|1|L1|G|1246
8XT0|1|L1|G|1247
8XT0|1|L1|A|1248
8XT0|1|L1|A|1249
8XT0|1|L1|C|1250
8XT0|1|L1|A|1251
8XT0|1|L1|A|1252
Current chains
- Chain L1
- 16s rRNA
Nearby chains
- Chain LB
- Large ribosomal subunit protein uL2m
- Chain LO
- Large ribosomal subunit protein uL15m
- Chain La
- Large ribosomal subunit protein bL27m
- Chain Lb
- Large ribosomal subunit protein bL28m
- Chain Lg
- Large ribosomal subunit protein bL33m
- Chain Li
- Large ribosomal subunit protein bL35m
Coloring options: