J6_8XT1_001
3D structure
- PDB id
- 8XT1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 39S mitoribosome with 5uM Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGAUAG*CAAC*GUUAG*CACUA*UUGUAG*CACACCCAAU
- Length
- 36 nucleotides
- Bulged bases
- 8XT1|1|L1|A|427, 8XT1|1|L1|G|470, 8XT1|1|L1|C|592
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8XT1|1|L1|A|357
8XT1|1|L1|G|358
8XT1|1|L1|A|359
8XT1|1|L1|U|360
8XT1|1|L1|A|361
8XT1|1|L1|G|362
*
8XT1|1|L1|C|373
8XT1|1|L1|A|374
8XT1|1|L1|A|375
8XT1|1|L1|C|376
*
8XT1|1|L1|G|424
8XT1|1|L1|U|425
8XT1|1|L1|U|426
8XT1|1|L1|A|427
8XT1|1|L1|G|428
*
8XT1|1|L1|C|453
8XT1|1|L1|A|454
8XT1|1|L1|C|455
8XT1|1|L1|U|456
8XT1|1|L1|A|457
*
8XT1|1|L1|U|468
8XT1|1|L1|U|469
8XT1|1|L1|G|470
8XT1|1|L1|U|471
8XT1|1|L1|A|472
8XT1|1|L1|G|473
*
8XT1|1|L1|C|587
8XT1|1|L1|A|588
8XT1|1|L1|C|589
8XT1|1|L1|A|590
8XT1|1|L1|C|591
8XT1|1|L1|C|592
8XT1|1|L1|C|593
8XT1|1|L1|A|594
8XT1|1|L1|A|595
8XT1|1|L1|U|596
Current chains
- Chain L1
- 16s rRNA
Nearby chains
- Chain L6
- Large ribosomal subunit protein mL63
- Chain LJ
- Large ribosomal subunit protein uL10m
- Chain LO
- Large ribosomal subunit protein uL15m
- Chain LP
- Large ribosomal subunit protein uL16m
- Chain LT
- Large ribosomal subunit protein bL20m
- Chain LU
- Large ribosomal subunit protein bL21m
- Chain La
- Large ribosomal subunit protein bL27m
- Chain Ld
- Large ribosomal subunit protein uL30m
- Chain Li
- Large ribosomal subunit protein bL35m
- Chain Ly
- Large ribosomal subunit protein mL51
- Chain Lz
- 39S ribosomal protein L52, mitochondrial
Coloring options: