J6_8XU8_003

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUGUCUCAAAGAUUAAG*CGCGCAAAU*AGUGACAAUAAAUAAC*GGAAUGAG*CGAGGAACAAUU*AAUAG

Length

68 nucleotides

Bulged bases

8XU8|1|2|A|47, 8XU8|1|2|A|541, 8XU8|1|2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XU8|1|2|C|31
8XU8|1|2|U|32
8XU8|1|2|U|33
8XU8|1|2|G|34
8XU8|1|2|U|35
8XU8|1|2|C|36
8XU8|1|2|U|37
8XU8|1|2|C|38
8XU8|1|2|A|39
8XU8|1|2|A|40
8XU8|1|2|A|41
8XU8|1|2|G|42
8XU8|1|2|A|43
8XU8|1|2|U|44
8XU8|1|2|U|45
8XU8|1|2|A|46
8XU8|1|2|A|47
8XU8|1|2|G|48
*
8XU8|1|2|C|431
8XU8|1|2|G|432
8XU8|1|2|C|433
8XU8|1|2|G|434
8XU8|1|2|C|435
8XU8|1|2|A|436
8XU8|1|2|A|437
8XU8|1|2|A|438
8XU8|1|2|U|439
*
8XU8|1|2|A|464
8XU8|1|2|G|465
8XU8|1|2|U|466
8XU8|1|2|G|467
8XU8|1|2|A|468
8XU8|1|2|C|469
8XU8|1|2|A|470
8XU8|1|2|A|471
8XU8|1|2|U|472
8XU8|1|2|A|473
8XU8|1|2|A|474
8XU8|1|2|A|475
8XU8|1|2|U|476
8XU8|1|2|A|477
8XU8|1|2|A|478
8XU8|1|2|C|479
*
8XU8|1|2|G|509
8XU8|1|2|G|510
8XU8|1|2|A|511
8XU8|1|2|A|512
8XU8|1|2|U|513
8XU8|1|2|G|514
8XU8|1|2|A|515
8XU8|1|2|G|516
*
8XU8|1|2|C|536
8XU8|1|2|G|537
8XU8|1|2|A|538
8XU8|1|2|G|539
8XU8|1|2|G|540
8XU8|1|2|A|541
8XU8|1|2|A|542
8XU8|1|2|C|543
8XU8|1|2|A|544
8XU8|1|2|A|545
8XU8|1|2|U|546
8XU8|1|2|U|547
*
8XU8|1|2|A|591
8XU8|1|2|A|592
8XU8|1|2|U|593
8XU8|1|2|A|594
8XU8|1|2|G|595

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SS

Small ribosomal subunit protein eS4A

Chain SW

Small ribosomal subunit protein uS4A

Chain Sc

Small ribosomal subunit protein uS12A

Chain Sd

Small ribosomal subunit protein eS24A

Chain Sg

Small ribosomal subunit protein eS30A

Chain x

Elongation factor 2