J6_8XZ3_002
3D structure
- PDB id
- 8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UUCA*UUUA*UG*CGCC*GACUAGUGAUCC*GCUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 8XZ3|1|A|C|2299, 8XZ3|1|A|U|2614, 8XZ3|1|A|G|2652, 8XZ3|1|A|A|2654, 8XZ3|1|A|U|2655
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8XZ3|1|A|U|2297
8XZ3|1|A|U|2298
8XZ3|1|A|C|2299
8XZ3|1|A|A|2300
*
8XZ3|1|A|U|2467
8XZ3|1|A|U|2468
8XZ3|1|A|U|2469
8XZ3|1|A|A|2470
*
8XZ3|1|A|U|2482
8XZ3|1|A|G|2483
*
8XZ3|1|A|C|2505
8XZ3|1|A|G|2506
8XZ3|1|A|C|2507
8XZ3|1|A|C|2508
*
8XZ3|1|A|G|2608
8XZ3|1|A|A|2609
8XZ3|1|A|C|2610
8XZ3|1|A|U|2611
8XZ3|1|A|A|2612
8XZ3|1|A|G|2613
8XZ3|1|A|U|2614
8XZ3|1|A|G|2615
8XZ3|1|A|A|2616
8XZ3|1|A|U|2617
8XZ3|1|A|C|2618
8XZ3|1|A|C|2619
*
8XZ3|1|A|G|2645
8XZ3|1|A|C|2646
8XZ3|1|A|U|2647
8XZ3|1|A|C|2648
8XZ3|1|A|A|2649
8XZ3|1|A|A|2650
8XZ3|1|A|C|2651
8XZ3|1|A|G|2652
8XZ3|1|A|G|2653
8XZ3|1|A|A|2654
8XZ3|1|A|U|2655
8XZ3|1|A|A|2656
8XZ3|1|A|A|2657
8XZ3|1|A|A|2658
8XZ3|1|A|A|2659
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL2
- Chain M
- Large ribosomal subunit protein uL15
- Chain X
- Large ribosomal subunit protein bL27
- Chain Y
- Large ribosomal subunit protein bL28
- Chain c
- Large ribosomal subunit protein bL33A
- Chain e
- Large ribosomal subunit protein bL35
Coloring options: