J6_8Y38_001
3D structure
- PDB id
- 8Y38 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- GC*GCACAC*GGAAGAGAAAG*UCGAUU*AAGAG*CUAAAUAC
- Length
- 38 nucleotides
- Bulged bases
- 8Y38|1|A|C|184, 8Y38|1|A|A|226
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8Y38|1|A|G|45
8Y38|1|A|C|46
*
8Y38|1|A|G|181
8Y38|1|A|C|182
8Y38|1|A|A|183
8Y38|1|A|C|184
8Y38|1|A|A|185
8Y38|1|A|C|186
*
8Y38|1|A|G|217
8Y38|1|A|G|218
8Y38|1|A|A|219
8Y38|1|A|A|220
8Y38|1|A|G|221
8Y38|1|A|A|222
8Y38|1|A|G|223
8Y38|1|A|A|224
8Y38|1|A|A|225
8Y38|1|A|A|226
8Y38|1|A|G|227
*
8Y38|1|A|U|233
8Y38|1|A|C|234
8Y38|1|A|G|235
8Y38|1|A|A|236
8Y38|1|A|U|237
8Y38|1|A|U|238
*
8Y38|1|A|A|265
8Y38|1|A|A|266
8Y38|1|A|G|267
8Y38|1|A|A|268
8Y38|1|A|G|269
*
8Y38|1|A|C|472
8Y38|1|A|U|473
8Y38|1|A|A|474
8Y38|1|A|A|475
8Y38|1|A|A|476
8Y38|1|A|U|477
8Y38|1|A|A|478
8Y38|1|A|C|479
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL34
- Chain E
- Large ribosomal subunit protein uL4
Coloring options: