J6_8Y38_002
3D structure
- PDB id
- 8Y38 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- UUUA*UUUG*CG*CGCUC*GACUUAGUGAUCC*GCUCAACGGAUAAAA
- Length
- 43 nucleotides
- Bulged bases
- 8Y38|1|A|U|2103, 8Y38|1|A|U|2417, 8Y38|1|A|G|2455, 8Y38|1|A|A|2457, 8Y38|1|A|U|2458
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8Y38|1|A|U|2101
8Y38|1|A|U|2102
8Y38|1|A|U|2103
8Y38|1|A|A|2104
*
8Y38|1|A|U|2270
8Y38|1|A|U|2271
8Y38|1|A|U|2272
8Y38|1|A|G|2273
*
8Y38|1|A|C|2285
8Y38|1|A|G|2286
*
8Y38|1|A|C|2308
8Y38|1|A|G|2309
8Y38|1|A|C|2310
8Y38|1|A|U|2311
8Y38|1|A|C|2312
*
8Y38|1|A|G|2410
8Y38|1|A|A|2411
8Y38|1|A|C|2412
8Y38|1|A|U|2413
8Y38|1|A|U|2414
8Y38|1|A|A|2415
8Y38|1|A|G|2416
8Y38|1|A|U|2417
8Y38|1|A|G|2418
8Y38|1|A|A|2419
8Y38|1|A|U|2420
8Y38|1|A|C|2421
8Y38|1|A|C|2422
*
8Y38|1|A|G|2448
8Y38|1|A|C|2449
8Y38|1|A|U|2450
8Y38|1|A|C|2451
8Y38|1|A|A|2452
8Y38|1|A|A|2453
8Y38|1|A|C|2454
8Y38|1|A|G|2455
8Y38|1|A|G|2456
8Y38|1|A|A|2457
8Y38|1|A|U|2458
8Y38|1|A|A|2459
8Y38|1|A|A|2460
8Y38|1|A|A|2461
8Y38|1|A|A|2462
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL33B
- Chain 3
- Large ribosomal subunit protein bL35
- Chain C
- Large ribosomal subunit protein uL2
- Chain J
- Large ribosomal subunit protein uL15
- Chain U
- Large ribosomal subunit protein bL27
- Chain V
- Large ribosomal subunit protein bL28
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