J6_8YDF_001
3D structure
- PDB id
- 8YDF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC
- Length
- 36 nucleotides
- Bulged bases
- 8YDF|1|1|A|223
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YDF|1|1|G|45
8YDF|1|1|G|46
*
8YDF|1|1|C|179
8YDF|1|1|G|180
8YDF|1|1|A|181
8YDF|1|1|A|182
8YDF|1|1|C|183
*
8YDF|1|1|G|214
8YDF|1|1|G|215
8YDF|1|1|A|216
8YDF|1|1|A|217
8YDF|1|1|A|218
8YDF|1|1|A|219
8YDF|1|1|G|220
8YDF|1|1|A|221
8YDF|1|1|A|222
8YDF|1|1|A|223
8YDF|1|1|U|224
*
8YDF|1|1|A|231
8YDF|1|1|G|232
8YDF|1|1|A|233
8YDF|1|1|U|234
8YDF|1|1|U|235
*
8YDF|1|1|A|262
8YDF|1|1|G|263
8YDF|1|1|C|264
8YDF|1|1|A|265
8YDF|1|1|G|266
*
8YDF|1|1|C|426
8YDF|1|1|U|427
8YDF|1|1|A|428
8YDF|1|1|A|429
8YDF|1|1|A|430
8YDF|1|1|U|431
8YDF|1|1|A|432
8YDF|1|1|C|433
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L34
Coloring options: