J6_8YDF_002
3D structure
- PDB id
- 8YDF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 8YDF|1|1|U|2076, 8YDF|1|1|U|2390, 8YDF|1|1|G|2428, 8YDF|1|1|A|2430
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YDF|1|1|U|2074
8YDF|1|1|U|2075
8YDF|1|1|U|2076
8YDF|1|1|A|2077
*
8YDF|1|1|U|2243
8YDF|1|1|U|2244
8YDF|1|1|U|2245
8YDF|1|1|G|2246
*
8YDF|1|1|C|2258
8YDF|1|1|U|2259
*
8YDF|1|1|A|2281
8YDF|1|1|G|2282
8YDF|1|1|C|2283
8YDF|1|1|A|2284
*
8YDF|1|1|U|2384
8YDF|1|1|C|2385
8YDF|1|1|A|2386
8YDF|1|1|U|2387
8YDF|1|1|A|2388
8YDF|1|1|G|2389
8YDF|1|1|U|2390
8YDF|1|1|G|2391
8YDF|1|1|A|2392
8YDF|1|1|U|2393
8YDF|1|1|C|2394
8YDF|1|1|C|2395
*
8YDF|1|1|G|2421
8YDF|1|1|C|2422
8YDF|1|1|U|2423
8YDF|1|1|C|2424
8YDF|1|1|A|2425
8YDF|1|1|A|2426
8YDF|1|1|C|2427
8YDF|1|1|G|2428
8YDF|1|1|G|2429
8YDF|1|1|A|2430
8YDF|1|1|U|2431
8YDF|1|1|A|2432
8YDF|1|1|A|2433
8YDF|1|1|A|2434
8YDF|1|1|A|2435
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 7
- Transfer RNA; tRNA
- Chain C
- 50S ribosomal protein L33
- Chain E
- 50S ribosomal protein L35
- Chain b
- 50S ribosomal protein L2
- Chain l
- 50S ribosomal protein L15
- Chain w
- 50S ribosomal protein L27
- Chain x
- 50S ribosomal protein L28
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