J6_8YLD_001
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 8YLD|1|A|A|67, 8YLD|1|A|A|109, 8YLD|1|A|U|329, 8YLD|1|C|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YLD|1|A|G|22
8YLD|1|A|A|23
8YLD|1|A|G|24
8YLD|1|A|U|25
8YLD|1|A|A|26
8YLD|1|A|C|27
*
8YLD|1|A|G|58
8YLD|1|A|G|59
8YLD|1|A|A|60
8YLD|1|A|A|61
8YLD|1|A|A|62
8YLD|1|A|A|63
8YLD|1|A|G|64
8YLD|1|A|A|65
8YLD|1|A|A|66
8YLD|1|A|A|67
8YLD|1|A|C|68
*
8YLD|1|A|G|75
8YLD|1|A|G|76
8YLD|1|A|A|77
8YLD|1|A|U|78
8YLD|1|A|U|79
*
8YLD|1|A|A|106
8YLD|1|A|A|107
8YLD|1|A|A|108
8YLD|1|A|A|109
8YLD|1|A|G|110
*
8YLD|1|A|C|321
8YLD|1|A|U|322
8YLD|1|A|A|323
8YLD|1|A|A|324
8YLD|1|A|A|325
8YLD|1|A|U|326
8YLD|1|A|A|327
8YLD|1|A|U|328
8YLD|1|A|U|329
8YLD|1|A|G|330
8YLD|1|A|G|331
*
8YLD|1|C|C|32
8YLD|1|C|A|33
8YLD|1|C|U|34
8YLD|1|C|C|35
Current chains
- Chain A
- 25S rRNA
- Chain C
- 5.8S rRNA
Nearby chains
- Chain F
- Large ribosomal subunit protein uL4A
- Chain N
- Large ribosomal subunit protein eL13A
- Chain P
- Large ribosomal subunit protein eL15A
- Chain j
- Large ribosomal subunit protein uL29A
- Chain k
- Large ribosomal subunit protein eL36A
- Chain l
- Large ribosomal subunit protein eL37A
Coloring options: