Loop J6_8YLD

3D structure

PDB id: 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
Description: State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å

Loop

Sequence: GACUG*CAUAG*UGAUUUCUG*CGGGA*UCUCUUAAGGUAG*UGAAUGGAUUAAC
Length: 50 nucleotides
Bulged bases: 8YLD|1|A|U|2314
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8YLD|1|A|G|2130
8YLD|1|A|A|2131
8YLD|1|A|C|2132
8YLD|1|A|U|2133
8YLD|1|A|G|2134
*
8YLD|1|A|C|2146
8YLD|1|A|A|2147
8YLD|1|A|U|2148
8YLD|1|A|A|2149
8YLD|1|A|G|2150
*
8YLD|1|A|U|2186
8YLD|1|A|G|2187
8YLD|1|A|A|2188
8YLD|1|A|U|2189
8YLD|1|A|U|2190
8YLD|1|A|U|2191
8YLD|1|A|C|2192
8YLD|1|A|U|2193
8YLD|1|A|G|2194
*
8YLD|1|A|C|2248
8YLD|1|A|G|2249
8YLD|1|A|G|2250
8YLD|1|A|G|2251
8YLD|1|A|A|2252
*
8YLD|1|A|U|2264
8YLD|1|A|C|2265
8YLD|1|A|U|2266
8YLD|1|A|C|2267
8YLD|1|A|U|2268
8YLD|1|A|U|2269
8YLD|1|A|A|2270
8YLD|1|A|A|2271
8YLD|1|A|G|2272
8YLD|1|A|G|2273
8YLD|1|A|U|2274
8YLD|1|A|A|2275
8YLD|1|A|G|2276
*
8YLD|1|A|U|2310
8YLD|1|A|G|2311
8YLD|1|A|A|2312
8YLD|1|A|A|2313
8YLD|1|A|U|2314
8YLD|1|A|G|2315
8YLD|1|A|G|2316
8YLD|1|A|A|2317
8YLD|1|A|U|2318
8YLD|1|A|U|2319
8YLD|1|A|A|2320
8YLD|1|A|A|2321
8YLD|1|A|C|2322

Current chains

Chain A: 25S rRNA

Nearby chains

Chain 2: Small subunit ribosomal RNA; SSU rRNA
Chain D: Large ribosomal subunit protein uL2A
Chain p: Large ribosomal subunit protein eL41A
Chain r: Large ribosomal subunit protein eL43A
Chain s: Transfer RNA; tRNA
Chain t: Transfer RNA; tRNA

J6_8YLD_002