J6_8YOP_003
3D structure
- PDB id
- 8YOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUCACGAUCC*GGUGUCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 8YOP|1|L5|G|3922, 8YOP|1|L5|C|4337, 8YOP|1|L5|A|4376, 8YOP|1|L5|A|4378, 8YOP|1|L5|A|4379
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YOP|1|L5|U|3920
8YOP|1|L5|U|3921
8YOP|1|L5|G|3922
8YOP|1|L5|A|3923
*
8YOP|1|L5|U|4188
8YOP|1|L5|U|4189
8YOP|1|L5|U|4190
8YOP|1|L5|G|4191
*
8YOP|1|L5|C|4204
8YOP|1|L5|A|4205
*
8YOP|1|L5|U|4227
8YOP|1|L5|G|4228
8YOP|1|L5|U|4229
8YOP|1|L5|C|4230
*
8YOP|1|L5|G|4331
8YOP|1|L5|C|4332
8YOP|1|L5|C|4333
8YOP|1|L5|U|4334
8YOP|1|L5|C|4335
8YOP|1|L5|A|4336
8YOP|1|L5|C|4337
8YOP|1|L5|G|4338
8YOP|1|L5|A|4339
8YOP|1|L5|U|4340
8YOP|1|L5|C|4341
8YOP|1|L5|C|4342
*
8YOP|1|L5|G|4370
8YOP|1|L5|G|4371
8YOP|1|L5|U|4372
8YOP|1|L5|G|4373
8YOP|1|L5|U|4374
8YOP|1|L5|C|4375
8YOP|1|L5|A|4376
8YOP|1|L5|G|4377
8YOP|1|L5|A|4378
8YOP|1|L5|A|4379
8YOP|1|L5|A|4380
8YOP|1|L5|A|4381
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain LN
- 60S ribosomal protein L15
- Chain LQ
- 60S ribosomal protein L18
- Chain LT
- 60S ribosomal protein L21
- Chain La
- 60S ribosomal protein L27a
- Chain Lb
- 60S ribosomal protein L29
- Chain Lo
- 60S ribosomal protein L36a
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