J6_8Z70_002
3D structure
- PDB id
- 8Z70 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUUUCUG*CG*UCUUAAGGUAG*UGAAUGGAUUAAC
- Length
- 45 nucleotides
- Bulged bases
- 8Z70|1|A|U|2268, 8Z70|1|A|U|2314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8Z70|1|A|G|2130
8Z70|1|A|A|2131
8Z70|1|A|C|2132
8Z70|1|A|U|2133
8Z70|1|A|G|2134
*
8Z70|1|A|C|2146
8Z70|1|A|A|2147
8Z70|1|A|U|2148
8Z70|1|A|A|2149
8Z70|1|A|G|2150
*
8Z70|1|A|U|2186
8Z70|1|A|G|2187
8Z70|1|A|A|2188
8Z70|1|A|U|2189
8Z70|1|A|U|2190
8Z70|1|A|U|2191
8Z70|1|A|C|2192
8Z70|1|A|U|2193
8Z70|1|A|G|2194
*
8Z70|1|A|C|2248
8Z70|1|A|G|2249
*
8Z70|1|A|U|2266
8Z70|1|A|C|2267
8Z70|1|A|U|2268
8Z70|1|A|U|2269
8Z70|1|A|A|2270
8Z70|1|A|A|2271
8Z70|1|A|G|2272
8Z70|1|A|G|2273
8Z70|1|A|U|2274
8Z70|1|A|A|2275
8Z70|1|A|G|2276
*
8Z70|1|A|U|2310
8Z70|1|A|G|2311
8Z70|1|A|A|2312
8Z70|1|A|A|2313
8Z70|1|A|U|2314
8Z70|1|A|G|2315
8Z70|1|A|G|2316
8Z70|1|A|A|2317
8Z70|1|A|U|2318
8Z70|1|A|U|2319
8Z70|1|A|A|2320
8Z70|1|A|A|2321
8Z70|1|A|C|2322
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain D
- Large ribosomal subunit protein uL2A
- Chain p
- Large ribosomal subunit protein eL41A
- Chain r
- Large ribosomal subunit protein eL43A
- Chain t
- Transfer RNA; tRNA
Coloring options: