3D structure

PDB id
8Z70 (explore in PDB, NAKB, or RNA 3D Hub)
Description
State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GACUG*CAUAG*UGAUUUCUG*CG*UCUUAAGGUAG*UGAAUGGAUUAAC
Length
45 nucleotides
Bulged bases
8Z70|1|A|U|2268, 8Z70|1|A|U|2314
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8Z70|1|A|G|2130
8Z70|1|A|A|2131
8Z70|1|A|C|2132
8Z70|1|A|U|2133
8Z70|1|A|G|2134
*
8Z70|1|A|C|2146
8Z70|1|A|A|2147
8Z70|1|A|U|2148
8Z70|1|A|A|2149
8Z70|1|A|G|2150
*
8Z70|1|A|U|2186
8Z70|1|A|G|2187
8Z70|1|A|A|2188
8Z70|1|A|U|2189
8Z70|1|A|U|2190
8Z70|1|A|U|2191
8Z70|1|A|C|2192
8Z70|1|A|U|2193
8Z70|1|A|G|2194
*
8Z70|1|A|C|2248
8Z70|1|A|G|2249
*
8Z70|1|A|U|2266
8Z70|1|A|C|2267
8Z70|1|A|U|2268
8Z70|1|A|U|2269
8Z70|1|A|A|2270
8Z70|1|A|A|2271
8Z70|1|A|G|2272
8Z70|1|A|G|2273
8Z70|1|A|U|2274
8Z70|1|A|A|2275
8Z70|1|A|G|2276
*
8Z70|1|A|U|2310
8Z70|1|A|G|2311
8Z70|1|A|A|2312
8Z70|1|A|A|2313
8Z70|1|A|U|2314
8Z70|1|A|G|2315
8Z70|1|A|G|2316
8Z70|1|A|A|2317
8Z70|1|A|U|2318
8Z70|1|A|U|2319
8Z70|1|A|A|2320
8Z70|1|A|A|2321
8Z70|1|A|C|2322

Current chains

Chain A
25S rRNA

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA
Chain D
Large ribosomal subunit protein uL2A
Chain p
Large ribosomal subunit protein eL41A
Chain r
Large ribosomal subunit protein eL43A
Chain t
Transfer RNA; tRNA

Coloring options:

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