J6_8Z71_001
3D structure
- PDB id
- 8Z71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 8Z71|1|A|A|67, 8Z71|1|A|A|108, 8Z71|1|A|U|329, 8Z71|1|C|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8Z71|1|A|G|22
8Z71|1|A|A|23
8Z71|1|A|G|24
8Z71|1|A|U|25
8Z71|1|A|A|26
8Z71|1|A|C|27
*
8Z71|1|A|G|58
8Z71|1|A|G|59
8Z71|1|A|A|60
8Z71|1|A|A|61
8Z71|1|A|A|62
8Z71|1|A|A|63
8Z71|1|A|G|64
8Z71|1|A|A|65
8Z71|1|A|A|66
8Z71|1|A|A|67
8Z71|1|A|C|68
*
8Z71|1|A|G|75
8Z71|1|A|G|76
8Z71|1|A|A|77
8Z71|1|A|U|78
8Z71|1|A|U|79
*
8Z71|1|A|A|106
8Z71|1|A|A|107
8Z71|1|A|A|108
8Z71|1|A|A|109
8Z71|1|A|G|110
*
8Z71|1|A|C|321
8Z71|1|A|U|322
8Z71|1|A|A|323
8Z71|1|A|A|324
8Z71|1|A|A|325
8Z71|1|A|U|326
8Z71|1|A|A|327
8Z71|1|A|U|328
8Z71|1|A|U|329
8Z71|1|A|G|330
8Z71|1|A|G|331
*
8Z71|1|C|C|32
8Z71|1|C|A|33
8Z71|1|C|U|34
8Z71|1|C|C|35
Current chains
- Chain A
- 25S rRNA
- Chain C
- 5.8S rRNA
Nearby chains
- Chain F
- Large ribosomal subunit protein uL4A
- Chain N
- Large ribosomal subunit protein eL13A
- Chain P
- Large ribosomal subunit protein eL15A
- Chain j
- Large ribosomal subunit protein uL29A
- Chain k
- Large ribosomal subunit protein eL36A
- Chain l
- Large ribosomal subunit protein eL37A
Coloring options: