Loop J6_8Z71

3D structure

PDB id: 8Z71 (explore in PDB, NAKB, or RNA 3D Hub)
Description: State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å

Loop

Sequence: GACUG*CAUAG*UGAUUUCUG*CG*UCUUAAGGUAG*UGAAUGGAUUAAC
Length: 45 nucleotides
Bulged bases: 8Z71|1|A|U|2268, 8Z71|1|A|U|2314
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8Z71|1|A|G|2130
8Z71|1|A|A|2131
8Z71|1|A|C|2132
8Z71|1|A|U|2133
8Z71|1|A|G|2134
*
8Z71|1|A|C|2146
8Z71|1|A|A|2147
8Z71|1|A|U|2148
8Z71|1|A|A|2149
8Z71|1|A|G|2150
*
8Z71|1|A|U|2186
8Z71|1|A|G|2187
8Z71|1|A|A|2188
8Z71|1|A|U|2189
8Z71|1|A|U|2190
8Z71|1|A|U|2191
8Z71|1|A|C|2192
8Z71|1|A|U|2193
8Z71|1|A|G|2194
*
8Z71|1|A|C|2248
8Z71|1|A|G|2249
*
8Z71|1|A|U|2266
8Z71|1|A|C|2267
8Z71|1|A|U|2268
8Z71|1|A|U|2269
8Z71|1|A|A|2270
8Z71|1|A|A|2271
8Z71|1|A|G|2272
8Z71|1|A|G|2273
8Z71|1|A|U|2274
8Z71|1|A|A|2275
8Z71|1|A|G|2276
*
8Z71|1|A|U|2310
8Z71|1|A|G|2311
8Z71|1|A|A|2312
8Z71|1|A|A|2313
8Z71|1|A|U|2314
8Z71|1|A|G|2315
8Z71|1|A|G|2316
8Z71|1|A|A|2317
8Z71|1|A|U|2318
8Z71|1|A|U|2319
8Z71|1|A|A|2320
8Z71|1|A|A|2321
8Z71|1|A|C|2322

Current chains

Chain A: 25S rRNA

Nearby chains

Chain 2: Small subunit ribosomal RNA; SSU rRNA
Chain D: Large ribosomal subunit protein uL2A
Chain p: Large ribosomal subunit protein eL41A
Chain r: Large ribosomal subunit protein eL43A
Chain t: Transfer RNA; tRNA

J6_8Z71_002