J6_8ZFG_001

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8ZFG|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZFG|1|a|G|45
8ZFG|1|a|G|46
*
8ZFG|1|a|C|179
8ZFG|1|a|G|180
8ZFG|1|a|A|181
8ZFG|1|a|A|182
8ZFG|1|a|C|183
*
8ZFG|1|a|G|214
8ZFG|1|a|G|215
8ZFG|1|a|A|216
8ZFG|1|a|A|217
8ZFG|1|a|A|218
8ZFG|1|a|A|219
8ZFG|1|a|G|220
8ZFG|1|a|A|221
8ZFG|1|a|A|222
8ZFG|1|a|A|223
8ZFG|1|a|U|224
*
8ZFG|1|a|A|231
8ZFG|1|a|G|232
8ZFG|1|a|A|233
8ZFG|1|a|U|234
8ZFG|1|a|U|235
*
8ZFG|1|a|A|262
8ZFG|1|a|G|263
8ZFG|1|a|C|264
8ZFG|1|a|A|265
8ZFG|1|a|G|266
*
8ZFG|1|a|C|426
8ZFG|1|a|U|427
8ZFG|1|a|A|428
8ZFG|1|a|A|429
8ZFG|1|a|A|430
8ZFG|1|a|U|431
8ZFG|1|a|A|432
8ZFG|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34