J6_9B00_001
3D structure
- PDB id
- 9B00 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC
- Length
- 36 nucleotides
- Bulged bases
- 9B00|1|1A|A|223
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9B00|1|1A|G|44
9B00|1|1A|C|45
*
9B00|1|1A|G|179
9B00|1|1A|G|180
9B00|1|1A|A|181
9B00|1|1A|A|182
9B00|1|1A|C|183
*
9B00|1|1A|G|214
9B00|1|1A|G|215
9B00|1|1A|A|216
9B00|1|1A|G|217
9B00|1|1A|A|218
9B00|1|1A|G|219
9B00|1|1A|G|220
9B00|1|1A|A|221
9B00|1|1A|A|222
9B00|1|1A|A|223
9B00|1|1A|G|224
*
9B00|1|1A|C|231
9B00|1|1A|G|232
9B00|1|1A|A|233
9B00|1|1A|C|234
9B00|1|1A|U|235
*
9B00|1|1A|A|262
9B00|1|1A|C|263
9B00|1|1A|C|264
9B00|1|1A|A|265
9B00|1|1A|G|266
*
9B00|1|1A|C|426
9B00|1|1A|U|427
9B00|1|1A|A|428
9B00|1|1A|A|429
9B00|1|1A|G|430
9B00|1|1A|U|431
9B00|1|1A|A|432
9B00|1|1A|C|433
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 17
- 50S ribosomal protein L34
Coloring options: