J6_9B00_003

3D structure

PDB id

9B00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

9B00|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B00|1|2A|G|44
9B00|1|2A|C|45
*
9B00|1|2A|G|179
9B00|1|2A|G|180
9B00|1|2A|A|181
9B00|1|2A|A|182
9B00|1|2A|C|183
*
9B00|1|2A|G|214
9B00|1|2A|G|215
9B00|1|2A|A|216
9B00|1|2A|G|217
9B00|1|2A|A|218
9B00|1|2A|G|219
9B00|1|2A|G|220
9B00|1|2A|A|221
9B00|1|2A|A|222
9B00|1|2A|A|223
9B00|1|2A|G|224
*
9B00|1|2A|C|231
9B00|1|2A|G|232
9B00|1|2A|A|233
9B00|1|2A|C|234
9B00|1|2A|U|235
*
9B00|1|2A|A|262
9B00|1|2A|C|263
9B00|1|2A|C|264
9B00|1|2A|A|265
9B00|1|2A|G|266
*
9B00|1|2A|C|426
9B00|1|2A|U|427
9B00|1|2A|A|428
9B00|1|2A|A|429
9B00|1|2A|G|430
9B00|1|2A|U|431
9B00|1|2A|A|432
9B00|1|2A|C|433

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34