3D structure

PDB id
9B0P (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human Hibernating class1 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.82 Å

Loop

Sequence
GGCGAC*GGAGAAGAAAC*GGAUU*AAGAG*CUAAAUAC*GUC
Length
38 nucleotides
Bulged bases
9B0P|1|L5|A|66, 9B0P|1|L8|U|34
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9B0P|1|L5|G|21
9B0P|1|L5|G|22
9B0P|1|L5|C|23
9B0P|1|L5|G|24
9B0P|1|L5|A|25
9B0P|1|L5|C|26
*
9B0P|1|L5|G|57
9B0P|1|L5|G|58
9B0P|1|L5|A|59
9B0P|1|L5|G|60
9B0P|1|L5|A|61
9B0P|1|L5|A|62
9B0P|1|L5|G|63
9B0P|1|L5|A|64
9B0P|1|L5|A|65
9B0P|1|L5|A|66
9B0P|1|L5|C|67
*
9B0P|1|L5|G|74
9B0P|1|L5|G|75
9B0P|1|L5|A|76
9B0P|1|L5|U|77
9B0P|1|L5|U|78
*
9B0P|1|L5|A|105
9B0P|1|L5|A|106
9B0P|1|L5|G|107
9B0P|1|L5|A|108
9B0P|1|L5|G|109
*
9B0P|1|L5|C|332
9B0P|1|L5|U|333
9B0P|1|L5|A|334
9B0P|1|L5|A|335
9B0P|1|L5|A|336
9B0P|1|L5|U|337
9B0P|1|L5|A|338
9B0P|1|L5|C|339
*
9B0P|1|L8|G|33
9B0P|1|L8|U|34
9B0P|1|L8|C|35

Current chains

Chain L5
28S rRNA [Homo sapiens]
Chain L8
5.8S rRNA [Homo sapiens]

Nearby chains

Chain LL
Large ribosomal subunit protein eL13
Chain LN
60S ribosomal protein L15
Chain Lh
60S ribosomal protein L35
Chain Li
60S ribosomal protein L36
Chain Lj
60S ribosomal protein L37

Coloring options:

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