3D structure

PDB id
9B0P (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human Hibernating class1 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.82 Å

Loop

Sequence
CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG
Length
27 nucleotides
Bulged bases
9B0P|1|L5|C|1501, 9B0P|1|L5|G|1502
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9B0P|1|L5|C|1352
9B0P|1|L5|G|1353
9B0P|1|L5|A|1354
9B0P|1|L5|G|1355
*
9B0P|1|L5|C|1384
9B0P|1|L5|G|1385
9B0P|1|L5|C|1386
9B0P|1|L5|A|1387
9B0P|1|L5|A|1388
*
9B0P|1|L5|U|1395
9B0P|1|L5|G|1396
9B0P|1|L5|A|1397
9B0P|1|L5|A|1398
9B0P|1|L5|G|1399
*
9B0P|1|L5|C|1418
9B0P|1|L5|G|1419
9B0P|1|L5|A|1420
9B0P|1|L5|G|1421
*
9B0P|1|L5|C|1464
9B0P|1|L5|G|1465
9B0P|1|L5|G|1466
*
9B0P|1|L5|C|1499
9B0P|1|L5|A|1500
9B0P|1|L5|C|1501
9B0P|1|L5|G|1502
9B0P|1|L5|A|1503
9B0P|1|L5|G|1504

Current chains

Chain L5
28S rRNA [Homo sapiens]

Nearby chains

Chain LC
60S ribosomal protein L4
Chain LL
Large ribosomal subunit protein eL13
Chain LQ
60S ribosomal protein L18
Chain La
60S ribosomal protein L27a
Chain Lb
Large ribosomal subunit protein eL29
Chain Li
60S ribosomal protein L36

Coloring options:

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