J6_9B4Z_001

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9B4Z|1|BA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B4Z|1|BA|G|45
9B4Z|1|BA|G|46
*
9B4Z|1|BA|C|179
9B4Z|1|BA|G|180
9B4Z|1|BA|A|181
9B4Z|1|BA|A|182
9B4Z|1|BA|C|183
*
9B4Z|1|BA|G|214
9B4Z|1|BA|G|215
9B4Z|1|BA|A|216
9B4Z|1|BA|A|217
9B4Z|1|BA|A|218
9B4Z|1|BA|A|219
9B4Z|1|BA|G|220
9B4Z|1|BA|A|221
9B4Z|1|BA|A|222
9B4Z|1|BA|A|223
9B4Z|1|BA|U|224
*
9B4Z|1|BA|A|231
9B4Z|1|BA|G|232
9B4Z|1|BA|A|233
9B4Z|1|BA|U|234
9B4Z|1|BA|U|235
*
9B4Z|1|BA|A|262
9B4Z|1|BA|G|263
9B4Z|1|BA|C|264
9B4Z|1|BA|A|265
9B4Z|1|BA|G|266
*
9B4Z|1|BA|C|426
9B4Z|1|BA|U|427
9B4Z|1|BA|A|428
9B4Z|1|BA|A|429
9B4Z|1|BA|A|430
9B4Z|1|BA|U|431
9B4Z|1|BA|A|432
9B4Z|1|BA|C|433

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34