J6_9BDL_002

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG

Length

27 nucleotides

Bulged bases

9BDL|1|A28S|C|1501, 9BDL|1|A28S|G|1502

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BDL|1|A28S|C|1352
9BDL|1|A28S|G|1353
9BDL|1|A28S|A|1354
9BDL|1|A28S|G|1355
*
9BDL|1|A28S|C|1384
9BDL|1|A28S|G|1385
9BDL|1|A28S|C|1386
9BDL|1|A28S|A|1387
9BDL|1|A28S|A|1388
*
9BDL|1|A28S|U|1395
9BDL|1|A28S|G|1396
9BDL|1|A28S|A|1397
9BDL|1|A28S|A|1398
9BDL|1|A28S|G|1399
*
9BDL|1|A28S|C|1418
9BDL|1|A28S|G|1419
9BDL|1|A28S|A|1420
9BDL|1|A28S|G|1421
*
9BDL|1|A28S|C|1464
9BDL|1|A28S|G|1465
9BDL|1|A28S|G|1466
*
9BDL|1|A28S|C|1499
9BDL|1|A28S|A|1500
9BDL|1|A28S|C|1501
9BDL|1|A28S|G|1502
9BDL|1|A28S|A|1503
9BDL|1|A28S|G|1504

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL13

Large ribosomal subunit protein eL13

Chain AL18

Large ribosomal subunit protein eL18

Chain AL28

60S ribosomal protein L27a

Chain AL29

Large ribosomal subunit protein eL29

Chain AL36

60S ribosomal protein L36