J6_9BDN_002

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG

Length

27 nucleotides

Bulged bases

9BDN|1|A28S|C|1501

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BDN|1|A28S|C|1352
9BDN|1|A28S|G|1353
9BDN|1|A28S|A|1354
9BDN|1|A28S|G|1355
*
9BDN|1|A28S|C|1384
9BDN|1|A28S|G|1385
9BDN|1|A28S|C|1386
9BDN|1|A28S|A|1387
9BDN|1|A28S|A|1388
*
9BDN|1|A28S|U|1395
9BDN|1|A28S|G|1396
9BDN|1|A28S|A|1397
9BDN|1|A28S|A|1398
9BDN|1|A28S|G|1399
*
9BDN|1|A28S|C|1418
9BDN|1|A28S|G|1419
9BDN|1|A28S|A|1420
9BDN|1|A28S|G|1421
*
9BDN|1|A28S|C|1464
9BDN|1|A28S|G|1465
9BDN|1|A28S|G|1466
*
9BDN|1|A28S|C|1499
9BDN|1|A28S|A|1500
9BDN|1|A28S|C|1501
9BDN|1|A28S|G|1502
9BDN|1|A28S|A|1503
9BDN|1|A28S|G|1504

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL13

Large ribosomal subunit protein eL13

Chain AL18

Large ribosomal subunit protein eL18

Chain AL28

60S ribosomal protein L27a

Chain AL29

Large ribosomal subunit protein eL29

Chain AL36

60S ribosomal protein L36