J6_9BDP_001
3D structure
- PDB id
- 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GGCGAC*GGAAAAGAAAC*GGAUU*AAGAG*CUAAAUAC*GUC
- Length
- 38 nucleotides
- Bulged bases
- 9BDP|1|A28S|A|66, 9BDP|1|A58S|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9BDP|1|A28S|G|21
9BDP|1|A28S|G|22
9BDP|1|A28S|C|23
9BDP|1|A28S|G|24
9BDP|1|A28S|A|25
9BDP|1|A28S|C|26
*
9BDP|1|A28S|G|57
9BDP|1|A28S|G|58
9BDP|1|A28S|A|59
9BDP|1|A28S|A|60
9BDP|1|A28S|A|61
9BDP|1|A28S|A|62
9BDP|1|A28S|G|63
9BDP|1|A28S|A|64
9BDP|1|A28S|A|65
9BDP|1|A28S|A|66
9BDP|1|A28S|C|67
*
9BDP|1|A28S|G|74
9BDP|1|A28S|G|75
9BDP|1|A28S|A|76
9BDP|1|A28S|U|77
9BDP|1|A28S|U|78
*
9BDP|1|A28S|A|105
9BDP|1|A28S|A|106
9BDP|1|A28S|G|107
9BDP|1|A28S|A|108
9BDP|1|A28S|G|109
*
9BDP|1|A28S|C|332
9BDP|1|A28S|U|333
9BDP|1|A28S|A|334
9BDP|1|A28S|A|335
9BDP|1|A28S|A|336
9BDP|1|A28S|U|337
9BDP|1|A28S|A|338
9BDP|1|A28S|C|339
*
9BDP|1|A58S|G|33
9BDP|1|A58S|U|34
9BDP|1|A58S|C|35
Current chains
- Chain A28S
- 28S rRNA
- Chain A58S
- 5.8S rRNA
Nearby chains
- Chain AL13
- Large ribosomal subunit protein eL13
- Chain AL15
- 60S ribosomal protein L15
- Chain AL35
- 60S ribosomal protein L35
- Chain AL36
- 60S ribosomal protein L36
- Chain AL37
- 60S ribosomal protein L37
Coloring options: