3D structure

PDB id
9BDP (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG
Length
27 nucleotides
Bulged bases
9BDP|1|A28S|C|1501
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9BDP|1|A28S|C|1352
9BDP|1|A28S|G|1353
9BDP|1|A28S|A|1354
9BDP|1|A28S|G|1355
*
9BDP|1|A28S|C|1384
9BDP|1|A28S|G|1385
9BDP|1|A28S|C|1386
9BDP|1|A28S|A|1387
9BDP|1|A28S|A|1388
*
9BDP|1|A28S|U|1395
9BDP|1|A28S|G|1396
9BDP|1|A28S|A|1397
9BDP|1|A28S|A|1398
9BDP|1|A28S|G|1399
*
9BDP|1|A28S|C|1418
9BDP|1|A28S|G|1419
9BDP|1|A28S|A|1420
9BDP|1|A28S|G|1421
*
9BDP|1|A28S|C|1464
9BDP|1|A28S|G|1465
9BDP|1|A28S|G|1466
*
9BDP|1|A28S|C|1499
9BDP|1|A28S|A|1500
9BDP|1|A28S|C|1501
9BDP|1|A28S|G|1502
9BDP|1|A28S|A|1503
9BDP|1|A28S|G|1504

Current chains

Chain A28S
28S rRNA

Nearby chains

Chain AL04
60S ribosomal protein L4
Chain AL13
Large ribosomal subunit protein eL13
Chain AL18
Large ribosomal subunit protein eL18
Chain AL28
60S ribosomal protein L27a
Chain AL29
Large ribosomal subunit protein eL29
Chain AL36
60S ribosomal protein L36

Coloring options:

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