J6_9BSS_001

3D structure

PDB id

9BSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

45SRbgA particle in complex with RbgA and YphC. Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GC*GCAGAC*GGAAGAGAAAG*CGAUU*AUCAG*CUAAAUAC

Length

37 nucleotides

Bulged bases

9BSS|1|A|G|184, 9BSS|1|A|A|226, 9BSS|1|A|U|478

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BSS|1|A|G|45
9BSS|1|A|C|46
*
9BSS|1|A|G|181
9BSS|1|A|C|182
9BSS|1|A|A|183
9BSS|1|A|G|184
9BSS|1|A|A|185
9BSS|1|A|C|186
*
9BSS|1|A|G|217
9BSS|1|A|G|218
9BSS|1|A|A|219
9BSS|1|A|A|220
9BSS|1|A|G|221
9BSS|1|A|A|222
9BSS|1|A|G|223
9BSS|1|A|A|224
9BSS|1|A|A|225
9BSS|1|A|A|226
9BSS|1|A|G|227
*
9BSS|1|A|C|234
9BSS|1|A|G|235
9BSS|1|A|A|236
9BSS|1|A|U|237
9BSS|1|A|U|238
*
9BSS|1|A|A|265
9BSS|1|A|U|266
9BSS|1|A|C|267
9BSS|1|A|A|268
9BSS|1|A|G|269
*
9BSS|1|A|C|473
9BSS|1|A|U|474
9BSS|1|A|A|475
9BSS|1|A|A|476
9BSS|1|A|A|477
9BSS|1|A|U|478
9BSS|1|A|A|479
9BSS|1|A|C|480

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

Large ribosomal subunit protein bL34