3D structure

PDB id
9CG6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S initiation complex (tRNA-fMet M1 + GUG start codon)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.61 Å

Loop

Sequence
GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC
Length
36 nucleotides
Bulged bases
9CG6|1|a|A|223
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9CG6|1|a|G|45
9CG6|1|a|G|46
*
9CG6|1|a|C|179
9CG6|1|a|G|180
9CG6|1|a|A|181
9CG6|1|a|A|182
9CG6|1|a|C|183
*
9CG6|1|a|G|214
9CG6|1|a|G|215
9CG6|1|a|A|216
9CG6|1|a|A|217
9CG6|1|a|A|218
9CG6|1|a|A|219
9CG6|1|a|G|220
9CG6|1|a|A|221
9CG6|1|a|A|222
9CG6|1|a|A|223
9CG6|1|a|U|224
*
9CG6|1|a|A|231
9CG6|1|a|G|232
9CG6|1|a|A|233
9CG6|1|a|U|234
9CG6|1|a|U|235
*
9CG6|1|a|A|262
9CG6|1|a|G|263
9CG6|1|a|C|264
9CG6|1|a|A|265
9CG6|1|a|G|266
*
9CG6|1|a|C|426
9CG6|1|a|U|427
9CG6|1|a|A|428
9CG6|1|a|A|429
9CG6|1|a|A|430
9CG6|1|a|U|431
9CG6|1|a|A|432
9CG6|1|a|C|433

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain 1
50S ribosomal protein L34

Coloring options:

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