J6_9CG7_001

3D structure

PDB id

9CG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + AUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9CG7|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9CG7|1|a|G|45
9CG7|1|a|G|46
*
9CG7|1|a|C|179
9CG7|1|a|G|180
9CG7|1|a|A|181
9CG7|1|a|A|182
9CG7|1|a|C|183
*
9CG7|1|a|G|214
9CG7|1|a|G|215
9CG7|1|a|A|216
9CG7|1|a|A|217
9CG7|1|a|A|218
9CG7|1|a|A|219
9CG7|1|a|G|220
9CG7|1|a|A|221
9CG7|1|a|A|222
9CG7|1|a|A|223
9CG7|1|a|U|224
*
9CG7|1|a|A|231
9CG7|1|a|G|232
9CG7|1|a|A|233
9CG7|1|a|U|234
9CG7|1|a|U|235
*
9CG7|1|a|A|262
9CG7|1|a|G|263
9CG7|1|a|C|264
9CG7|1|a|A|265
9CG7|1|a|G|266
*
9CG7|1|a|C|426
9CG7|1|a|U|427
9CG7|1|a|A|428
9CG7|1|a|A|429
9CG7|1|a|A|430
9CG7|1|a|U|431
9CG7|1|a|A|432
9CG7|1|a|C|433

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34