J6_9D7S_003

3D structure

PDB id

9D7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

9D7S|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9D7S|1|2A|G|44
9D7S|1|2A|C|45
*
9D7S|1|2A|G|179
9D7S|1|2A|G|180
9D7S|1|2A|A|181
9D7S|1|2A|A|182
9D7S|1|2A|C|183
*
9D7S|1|2A|G|214
9D7S|1|2A|G|215
9D7S|1|2A|A|216
9D7S|1|2A|G|217
9D7S|1|2A|A|218
9D7S|1|2A|G|219
9D7S|1|2A|G|220
9D7S|1|2A|A|221
9D7S|1|2A|A|222
9D7S|1|2A|A|223
9D7S|1|2A|G|224
*
9D7S|1|2A|C|231
9D7S|1|2A|G|232
9D7S|1|2A|A|233
9D7S|1|2A|C|234
9D7S|1|2A|U|235
*
9D7S|1|2A|A|262
9D7S|1|2A|C|263
9D7S|1|2A|C|264
9D7S|1|2A|A|265
9D7S|1|2A|G|266
*
9D7S|1|2A|C|426
9D7S|1|2A|U|427
9D7S|1|2A|A|428
9D7S|1|2A|A|429
9D7S|1|2A|G|430
9D7S|1|2A|U|431
9D7S|1|2A|A|432
9D7S|1|2A|C|433

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34