3D structure

PDB id
9DFC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC
Length
36 nucleotides
Bulged bases
9DFC|1|1A|A|223
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9DFC|1|1A|G|44
9DFC|1|1A|C|45
*
9DFC|1|1A|G|179
9DFC|1|1A|G|180
9DFC|1|1A|A|181
9DFC|1|1A|A|182
9DFC|1|1A|C|183
*
9DFC|1|1A|G|214
9DFC|1|1A|G|215
9DFC|1|1A|A|216
9DFC|1|1A|G|217
9DFC|1|1A|A|218
9DFC|1|1A|G|219
9DFC|1|1A|G|220
9DFC|1|1A|A|221
9DFC|1|1A|A|222
9DFC|1|1A|A|223
9DFC|1|1A|G|224
*
9DFC|1|1A|C|231
9DFC|1|1A|G|232
9DFC|1|1A|A|233
9DFC|1|1A|C|234
9DFC|1|1A|U|235
*
9DFC|1|1A|A|262
9DFC|1|1A|C|263
9DFC|1|1A|C|264
9DFC|1|1A|A|265
9DFC|1|1A|G|266
*
9DFC|1|1A|C|426
9DFC|1|1A|U|427
9DFC|1|1A|A|428
9DFC|1|1A|A|429
9DFC|1|1A|G|430
9DFC|1|1A|U|431
9DFC|1|1A|A|432
9DFC|1|1A|C|433

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 17
50S ribosomal protein L34

Coloring options:

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