J6_9DFD_001

3D structure

PDB id

9DFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin B, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

9DFD|1|1A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DFD|1|1A|G|44
9DFD|1|1A|C|45
*
9DFD|1|1A|G|179
9DFD|1|1A|G|180
9DFD|1|1A|A|181
9DFD|1|1A|A|182
9DFD|1|1A|C|183
*
9DFD|1|1A|G|214
9DFD|1|1A|G|215
9DFD|1|1A|A|216
9DFD|1|1A|G|217
9DFD|1|1A|A|218
9DFD|1|1A|G|219
9DFD|1|1A|G|220
9DFD|1|1A|A|221
9DFD|1|1A|A|222
9DFD|1|1A|A|223
9DFD|1|1A|G|224
*
9DFD|1|1A|C|231
9DFD|1|1A|G|232
9DFD|1|1A|A|233
9DFD|1|1A|C|234
9DFD|1|1A|U|235
*
9DFD|1|1A|A|262
9DFD|1|1A|C|263
9DFD|1|1A|C|264
9DFD|1|1A|A|265
9DFD|1|1A|G|266
*
9DFD|1|1A|C|426
9DFD|1|1A|U|427
9DFD|1|1A|A|428
9DFD|1|1A|A|429
9DFD|1|1A|G|430
9DFD|1|1A|U|431
9DFD|1|1A|A|432
9DFD|1|1A|C|433

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34