J6_9DP7_002
3D structure
- PDB id
- 9DP7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- U(OMU)GA*UUUG*CA*UGUC*GCCUAUCGAUCC*(OMG)GUGCCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 9DP7|1|A1|G|2418, 9DP7|1|A1|C|2760, 9DP7|1|A1|A|2799, 9DP7|1|A1|A|2801, 9DP7|1|A1|A|2802
- QA status
- Modified nucleotides: OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9DP7|1|A1|U|2416
9DP7|1|A1|OMU|2417
9DP7|1|A1|G|2418
9DP7|1|A1|A|2419
*
9DP7|1|A1|U|2611
9DP7|1|A1|U|2612
9DP7|1|A1|U|2613
9DP7|1|A1|G|2614
*
9DP7|1|A1|C|2627
9DP7|1|A1|A|2628
*
9DP7|1|A1|U|2650
9DP7|1|A1|G|2651
9DP7|1|A1|U|2652
9DP7|1|A1|C|2653
*
9DP7|1|A1|G|2754
9DP7|1|A1|C|2755
9DP7|1|A1|C|2756
9DP7|1|A1|U|2757
9DP7|1|A1|A|2758
9DP7|1|A1|U|2759
9DP7|1|A1|C|2760
9DP7|1|A1|G|2761
9DP7|1|A1|A|2762
9DP7|1|A1|U|2763
9DP7|1|A1|C|2764
9DP7|1|A1|C|2765
*
9DP7|1|A1|OMG|2793
9DP7|1|A1|G|2794
9DP7|1|A1|U|2795
9DP7|1|A1|G|2796
9DP7|1|A1|C|2797
9DP7|1|A1|C|2798
9DP7|1|A1|A|2799
9DP7|1|A1|G|2800
9DP7|1|A1|A|2801
9DP7|1|A1|A|2802
9DP7|1|A1|A|2803
9DP7|1|A1|A|2804
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain AN
- 60S ribosomal protein L15-A
- Chain AQ
- 60S ribosomal protein L18-A
- Chain AT
- 60S ribosomal protein L21-A
- Chain Aa
- 60S ribosomal protein L28
- Chain Ab
- Large ribosomal subunit protein eL29
- Chain Ao
- 60S ribosomal protein L42-A
Coloring options: