J6_9EHO_001
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GACUAC*GGAAAAGAAAC*GGAUU*AGAAG*CUAAAUAC*GUC
- Length
- 38 nucleotides
- Bulged bases
- 9EHO|1|5|A|66, 9EHO|1|8|U|33
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9EHO|1|5|G|21
9EHO|1|5|A|22
9EHO|1|5|C|23
9EHO|1|5|U|24
9EHO|1|5|A|25
9EHO|1|5|C|26
*
9EHO|1|5|G|57
9EHO|1|5|G|58
9EHO|1|5|A|59
9EHO|1|5|A|60
9EHO|1|5|A|61
9EHO|1|5|A|62
9EHO|1|5|G|63
9EHO|1|5|A|64
9EHO|1|5|A|65
9EHO|1|5|A|66
9EHO|1|5|C|67
*
9EHO|1|5|G|74
9EHO|1|5|G|75
9EHO|1|5|A|76
9EHO|1|5|U|77
9EHO|1|5|U|78
*
9EHO|1|5|A|105
9EHO|1|5|G|106
9EHO|1|5|A|107
9EHO|1|5|A|108
9EHO|1|5|G|109
*
9EHO|1|5|C|339
9EHO|1|5|U|340
9EHO|1|5|A|341
9EHO|1|5|A|342
9EHO|1|5|A|343
9EHO|1|5|U|344
9EHO|1|5|A|345
9EHO|1|5|C|346
*
9EHO|1|8|G|32
9EHO|1|8|U|33
9EHO|1|8|C|34
Current chains
- Chain 5
- 28S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain L
- Large ribosomal subunit protein eL13
- Chain N
- Ribosomal protein L15
- Chain h
- 60S ribosomal protein L35
- Chain i
- Large ribosomal subunit protein eL36
- Chain j
- Ribosomal protein L37
Coloring options: