J6_9F1D_001
3D structure
- PDB id
- 9F1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- GGCGAC*GGAAAAGAAAC*GGAUU*AAGAG*CUAAAUAC*GUC
- Length
- 38 nucleotides
- Bulged bases
- 9F1D|1|B5|A|66, 9F1D|1|B8|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9F1D|1|B5|G|21
9F1D|1|B5|G|22
9F1D|1|B5|C|23
9F1D|1|B5|G|24
9F1D|1|B5|A|25
9F1D|1|B5|C|26
*
9F1D|1|B5|G|57
9F1D|1|B5|G|58
9F1D|1|B5|A|59
9F1D|1|B5|A|60
9F1D|1|B5|A|61
9F1D|1|B5|A|62
9F1D|1|B5|G|63
9F1D|1|B5|A|64
9F1D|1|B5|A|65
9F1D|1|B5|A|66
9F1D|1|B5|C|67
*
9F1D|1|B5|G|74
9F1D|1|B5|G|75
9F1D|1|B5|A|76
9F1D|1|B5|U|77
9F1D|1|B5|U|78
*
9F1D|1|B5|A|105
9F1D|1|B5|A|106
9F1D|1|B5|G|107
9F1D|1|B5|A|108
9F1D|1|B5|G|109
*
9F1D|1|B5|C|332
9F1D|1|B5|U|333
9F1D|1|B5|A|334
9F1D|1|B5|A|335
9F1D|1|B5|A|336
9F1D|1|B5|U|337
9F1D|1|B5|A|338
9F1D|1|B5|C|339
*
9F1D|1|B8|G|33
9F1D|1|B8|U|34
9F1D|1|B8|C|35
Current chains
- Chain B5
- 28S rRNA
- Chain B8
- 5.8S rRNA
Nearby chains
- Chain BL
- Large ribosomal subunit protein eL13
- Chain BN
- Ribosomal protein L15
- Chain Bh
- 60S ribosomal protein L35
- Chain Bi
- 60S ribosomal protein L36
- Chain Bj
- Ribosomal protein L37
Coloring options: