J6_9F1D_003
3D structure
- PDB id
- 9F1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- (PSU)UGA*UUUG*CA*(OMU)(OMG)UC*GCCUCACGAUCC*(OMG)GUGUCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 9F1D|1|B5|G|3654, 9F1D|1|B5|C|4083, 9F1D|1|B5|A|4122, 9F1D|1|B5|A|4124, 9F1D|1|B5|A|4125
- QA status
- Modified nucleotides: PSU, OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9F1D|1|B5|PSU|3652
9F1D|1|B5|U|3653
9F1D|1|B5|G|3654
9F1D|1|B5|A|3655
*
9F1D|1|B5|U|3934
9F1D|1|B5|U|3935
9F1D|1|B5|U|3936
9F1D|1|B5|G|3937
*
9F1D|1|B5|C|3950
9F1D|1|B5|A|3951
*
9F1D|1|B5|OMU|3973
9F1D|1|B5|OMG|3974
9F1D|1|B5|U|3975
9F1D|1|B5|C|3976
*
9F1D|1|B5|G|4077
9F1D|1|B5|C|4078
9F1D|1|B5|C|4079
9F1D|1|B5|U|4080
9F1D|1|B5|C|4081
9F1D|1|B5|A|4082
9F1D|1|B5|C|4083
9F1D|1|B5|G|4084
9F1D|1|B5|A|4085
9F1D|1|B5|U|4086
9F1D|1|B5|C|4087
9F1D|1|B5|C|4088
*
9F1D|1|B5|OMG|4116
9F1D|1|B5|G|4117
9F1D|1|B5|U|4118
9F1D|1|B5|G|4119
9F1D|1|B5|U|4120
9F1D|1|B5|C|4121
9F1D|1|B5|A|4122
9F1D|1|B5|G|4123
9F1D|1|B5|A|4124
9F1D|1|B5|A|4125
9F1D|1|B5|A|4126
9F1D|1|B5|A|4127
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BA
- Large ribosomal subunit protein uL2
- Chain BN
- Ribosomal protein L15
- Chain BQ
- Large ribosomal subunit protein eL18
- Chain BT
- 60S ribosomal protein L21
- Chain Ba
- 60S ribosomal protein L27a
- Chain Bb
- 60S ribosomal protein L29
- Chain Bo
- Large ribosomal subunit protein eL42
Coloring options: