J6_9FCO_001
3D structure
- PDB id
- 9FCO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E. coli 30S-IF1-IF3-mRNA-Kasugamycin complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CGAUG*CCGCCUG*CAAAUGAAUU*ACAC*GGUA*UG
- Length
- 32 nucleotides
- Bulged bases
- 9FCO|1|B|C|1397, 9FCO|1|B|A|1398, 9FCO|1|B|G|1505, 9FCO|1|B|U|1506
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9FCO|1|B|C|817
9FCO|1|B|G|818
9FCO|1|B|A|819
9FCO|1|B|U|820
9FCO|1|B|G|821
*
9FCO|1|B|C|879
9FCO|1|B|C|880
9FCO|1|B|G|881
9FCO|1|B|C|882
9FCO|1|B|C|883
9FCO|1|B|U|884
9FCO|1|B|G|885
*
9FCO|1|B|C|912
9FCO|1|B|A|913
9FCO|1|B|A|914
9FCO|1|B|A|915
9FCO|1|B|U|916
9FCO|1|B|G|917
9FCO|1|B|A|918
9FCO|1|B|A|919
9FCO|1|B|U|920
9FCO|1|B|U|921
*
9FCO|1|B|A|1396
9FCO|1|B|C|1397
9FCO|1|B|A|1398
9FCO|1|B|C|1399
*
9FCO|1|B|G|1504
9FCO|1|B|G|1505
9FCO|1|B|U|1506
9FCO|1|B|A|1507
*
9FCO|1|B|U|1528
9FCO|1|B|G|1529
Current chains
- Chain B
- 16S rRNA
Nearby chains
- Chain E
- Small ribosomal subunit protein uS5
- Chain H
- Small ribosomal subunit protein uS8
- Chain K
- Small ribosomal subunit protein uS11
- Chain L
- Small ribosomal subunit protein uS12
- Chain Q
- Small ribosomal subunit protein uS17
- Chain U
- Small ribosomal subunit protein bS21
- Chain Y
- mRNA
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