J6_9GGR_001

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9GGR|1|AV|A|223

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9GGR|1|AV|G|45
9GGR|1|AV|G|46
*
9GGR|1|AV|C|179
9GGR|1|AV|G|180
9GGR|1|AV|A|181
9GGR|1|AV|A|182
9GGR|1|AV|C|183
*
9GGR|1|AV|G|214
9GGR|1|AV|G|215
9GGR|1|AV|A|216
9GGR|1|AV|A|217
9GGR|1|AV|A|218
9GGR|1|AV|A|219
9GGR|1|AV|G|220
9GGR|1|AV|A|221
9GGR|1|AV|A|222
9GGR|1|AV|A|223
9GGR|1|AV|U|224
*
9GGR|1|AV|A|231
9GGR|1|AV|G|232
9GGR|1|AV|A|233
9GGR|1|AV|U|234
9GGR|1|AV|U|235
*
9GGR|1|AV|A|262
9GGR|1|AV|G|263
9GGR|1|AV|C|264
9GGR|1|AV|A|265
9GGR|1|AV|G|266
*
9GGR|1|AV|C|426
9GGR|1|AV|U|427
9GGR|1|AV|A|428
9GGR|1|AV|A|429
9GGR|1|AV|A|430
9GGR|1|AV|U|431
9GGR|1|AV|A|432
9GGR|1|AV|C|433

Current chains

Chain AV

23S ribosomal RNA

Nearby chains

Chain Ax

Large ribosomal subunit protein bL34