J6_9GHB_001

3D structure

PDB id

9GHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G in post-translocational state (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9GHB|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9GHB|1|a|G|45
9GHB|1|a|G|46
*
9GHB|1|a|C|179
9GHB|1|a|G|180
9GHB|1|a|A|181
9GHB|1|a|A|182
9GHB|1|a|C|183
*
9GHB|1|a|G|214
9GHB|1|a|G|215
9GHB|1|a|A|216
9GHB|1|a|A|217
9GHB|1|a|A|218
9GHB|1|a|A|219
9GHB|1|a|G|220
9GHB|1|a|A|221
9GHB|1|a|A|222
9GHB|1|a|A|223
9GHB|1|a|U|224
*
9GHB|1|a|A|231
9GHB|1|a|G|232
9GHB|1|a|A|233
9GHB|1|a|U|234
9GHB|1|a|U|235
*
9GHB|1|a|A|262
9GHB|1|a|G|263
9GHB|1|a|C|264
9GHB|1|a|A|265
9GHB|1|a|G|266
*
9GHB|1|a|C|426
9GHB|1|a|U|427
9GHB|1|a|A|428
9GHB|1|a|A|429
9GHB|1|a|A|430
9GHB|1|a|U|431
9GHB|1|a|A|432
9GHB|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34