J6_9GHD_001

3D structure

PDB id

9GHD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9GHD|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9GHD|1|a|G|45
9GHD|1|a|G|46
*
9GHD|1|a|C|179
9GHD|1|a|G|180
9GHD|1|a|A|181
9GHD|1|a|A|182
9GHD|1|a|C|183
*
9GHD|1|a|G|214
9GHD|1|a|G|215
9GHD|1|a|A|216
9GHD|1|a|A|217
9GHD|1|a|A|218
9GHD|1|a|A|219
9GHD|1|a|G|220
9GHD|1|a|A|221
9GHD|1|a|A|222
9GHD|1|a|A|223
9GHD|1|a|U|224
*
9GHD|1|a|A|231
9GHD|1|a|G|232
9GHD|1|a|A|233
9GHD|1|a|U|234
9GHD|1|a|U|235
*
9GHD|1|a|A|262
9GHD|1|a|G|263
9GHD|1|a|C|264
9GHD|1|a|A|265
9GHD|1|a|G|266
*
9GHD|1|a|C|426
9GHD|1|a|U|427
9GHD|1|a|A|428
9GHD|1|a|A|429
9GHD|1|a|A|430
9GHD|1|a|U|431
9GHD|1|a|A|432
9GHD|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34