J6_9GHF_001

3D structure

PDB id

9GHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9GHF|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9GHF|1|a|G|45
9GHF|1|a|G|46
*
9GHF|1|a|C|179
9GHF|1|a|G|180
9GHF|1|a|A|181
9GHF|1|a|A|182
9GHF|1|a|C|183
*
9GHF|1|a|G|214
9GHF|1|a|G|215
9GHF|1|a|A|216
9GHF|1|a|A|217
9GHF|1|a|A|218
9GHF|1|a|A|219
9GHF|1|a|G|220
9GHF|1|a|A|221
9GHF|1|a|A|222
9GHF|1|a|A|223
9GHF|1|a|U|224
*
9GHF|1|a|A|231
9GHF|1|a|G|232
9GHF|1|a|A|233
9GHF|1|a|U|234
9GHF|1|a|U|235
*
9GHF|1|a|A|262
9GHF|1|a|G|263
9GHF|1|a|C|264
9GHF|1|a|A|265
9GHF|1|a|G|266
*
9GHF|1|a|C|426
9GHF|1|a|U|427
9GHF|1|a|A|428
9GHF|1|a|A|429
9GHF|1|a|A|430
9GHF|1|a|U|431
9GHF|1|a|A|432
9GHF|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34