J6_9GXX_001

3D structure

PDB id

9GXX (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9GXX|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9GXX|1|a|G|45
9GXX|1|a|G|46
*
9GXX|1|a|C|179
9GXX|1|a|G|180
9GXX|1|a|A|181
9GXX|1|a|A|182
9GXX|1|a|C|183
*
9GXX|1|a|G|214
9GXX|1|a|G|215
9GXX|1|a|A|216
9GXX|1|a|A|217
9GXX|1|a|A|218
9GXX|1|a|A|219
9GXX|1|a|G|220
9GXX|1|a|A|221
9GXX|1|a|A|222
9GXX|1|a|A|223
9GXX|1|a|U|224
*
9GXX|1|a|A|231
9GXX|1|a|G|232
9GXX|1|a|A|233
9GXX|1|a|U|234
9GXX|1|a|U|235
*
9GXX|1|a|A|262
9GXX|1|a|G|263
9GXX|1|a|C|264
9GXX|1|a|A|265
9GXX|1|a|G|266
*
9GXX|1|a|C|426
9GXX|1|a|U|427
9GXX|1|a|A|428
9GXX|1|a|A|429
9GXX|1|a|A|430
9GXX|1|a|U|431
9GXX|1|a|A|432
9GXX|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34