J6_9GY4_003
3D structure
- PDB id
- 9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUCACGAUCC*GGUGUCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 9GY4|1|5|G|3922, 9GY4|1|5|C|4337, 9GY4|1|5|A|4376, 9GY4|1|5|A|4378, 9GY4|1|5|A|4379
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9GY4|1|5|U|3920
9GY4|1|5|U|3921
9GY4|1|5|G|3922
9GY4|1|5|A|3923
*
9GY4|1|5|U|4188
9GY4|1|5|U|4189
9GY4|1|5|U|4190
9GY4|1|5|G|4191
*
9GY4|1|5|C|4204
9GY4|1|5|A|4205
*
9GY4|1|5|U|4227
9GY4|1|5|G|4228
9GY4|1|5|U|4229
9GY4|1|5|C|4230
*
9GY4|1|5|G|4331
9GY4|1|5|C|4332
9GY4|1|5|C|4333
9GY4|1|5|U|4334
9GY4|1|5|C|4335
9GY4|1|5|A|4336
9GY4|1|5|C|4337
9GY4|1|5|G|4338
9GY4|1|5|A|4339
9GY4|1|5|U|4340
9GY4|1|5|C|4341
9GY4|1|5|C|4342
*
9GY4|1|5|G|4370
9GY4|1|5|G|4371
9GY4|1|5|U|4372
9GY4|1|5|G|4373
9GY4|1|5|U|4374
9GY4|1|5|C|4375
9GY4|1|5|A|4376
9GY4|1|5|G|4377
9GY4|1|5|A|4378
9GY4|1|5|A|4379
9GY4|1|5|A|4380
9GY4|1|5|A|4381
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain LN
- 60S ribosomal protein L15
- Chain LQ
- 60S ribosomal protein L18
- Chain LT
- 60S ribosomal protein L21
- Chain La
- 60S ribosomal protein L27a
- Chain Lb
- 60S ribosomal protein L29
- Chain Lo
- 60S ribosomal protein L36a
- Chain a
- 60S ribosomal protein L8
Coloring options: