J6_9H3S_001

3D structure

PDB id

9H3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_L22

Experimental method

ELECTRON MICROSCOPY

Resolution

4.16 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9H3S|1|A|A|223, 9H3S|1|A|C|264

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H3S|1|A|G|45
9H3S|1|A|G|46
*
9H3S|1|A|C|179
9H3S|1|A|G|180
9H3S|1|A|A|181
9H3S|1|A|A|182
9H3S|1|A|C|183
*
9H3S|1|A|G|214
9H3S|1|A|G|215
9H3S|1|A|A|216
9H3S|1|A|A|217
9H3S|1|A|A|218
9H3S|1|A|A|219
9H3S|1|A|G|220
9H3S|1|A|A|221
9H3S|1|A|A|222
9H3S|1|A|A|223
9H3S|1|A|U|224
*
9H3S|1|A|A|231
9H3S|1|A|G|232
9H3S|1|A|A|233
9H3S|1|A|U|234
9H3S|1|A|U|235
*
9H3S|1|A|A|262
9H3S|1|A|G|263
9H3S|1|A|C|264
9H3S|1|A|A|265
9H3S|1|A|G|266
*
9H3S|1|A|C|426
9H3S|1|A|U|427
9H3S|1|A|A|428
9H3S|1|A|A|429
9H3S|1|A|A|430
9H3S|1|A|U|431
9H3S|1|A|A|432
9H3S|1|A|C|433

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34