Loop J6_9H3S

3D structure

PDB id: 9H3S (explore in PDB, NAKB, or RNA 3D Hub)
Description: 50S subunit precursor C-CP_YjgA_L22
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.16 Å

Loop

Sequence: UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
Length: 41 nucleotides
Bulged bases: 9H3S|1|A|U|2076, 9H3S|1|A|A|2388, 9H3S|1|A|U|2390, 9H3S|1|A|G|2428, 9H3S|1|A|A|2430, 9H3S|1|A|U|2431, 9H3S|1|A|A|2434
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9H3S|1|A|U|2074
9H3S|1|A|U|2075
9H3S|1|A|U|2076
9H3S|1|A|A|2077
*
9H3S|1|A|U|2243
9H3S|1|A|U|2244
9H3S|1|A|U|2245
9H3S|1|A|G|2246
*
9H3S|1|A|C|2258
9H3S|1|A|U|2259
*
9H3S|1|A|A|2281
9H3S|1|A|G|2282
9H3S|1|A|C|2283
9H3S|1|A|A|2284
*
9H3S|1|A|U|2384
9H3S|1|A|C|2385
9H3S|1|A|A|2386
9H3S|1|A|U|2387
9H3S|1|A|A|2388
9H3S|1|A|G|2389
9H3S|1|A|U|2390
9H3S|1|A|G|2391
9H3S|1|A|A|2392
9H3S|1|A|U|2393
9H3S|1|A|C|2394
9H3S|1|A|C|2395
*
9H3S|1|A|G|2421
9H3S|1|A|C|2422
9H3S|1|A|U|2423
9H3S|1|A|C|2424
9H3S|1|A|A|2425
9H3S|1|A|A|2426
9H3S|1|A|C|2427
9H3S|1|A|G|2428
9H3S|1|A|G|2429
9H3S|1|A|A|2430
9H3S|1|A|U|2431
9H3S|1|A|A|2432
9H3S|1|A|A|2433
9H3S|1|A|A|2434
9H3S|1|A|A|2435

Current chains

Chain A: 23S ribosomal RNA

Nearby chains

Chain C: UPF0307 protein YjgA
Chain L: Large ribosomal subunit protein uL15
Chain W: Large ribosomal subunit protein bL27
Chain X: Large ribosomal subunit protein bL28

J6_9H3S_002