J6_9H3X_001

3D structure

PDB id

9H3X (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_H68_L35

Experimental method

ELECTRON MICROSCOPY

Resolution

4.12 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9H3X|1|A|A|223, 9H3X|1|A|A|265, 9H3X|1|A|A|428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H3X|1|A|G|45
9H3X|1|A|G|46
*
9H3X|1|A|C|179
9H3X|1|A|G|180
9H3X|1|A|A|181
9H3X|1|A|A|182
9H3X|1|A|C|183
*
9H3X|1|A|G|214
9H3X|1|A|G|215
9H3X|1|A|A|216
9H3X|1|A|A|217
9H3X|1|A|A|218
9H3X|1|A|A|219
9H3X|1|A|G|220
9H3X|1|A|A|221
9H3X|1|A|A|222
9H3X|1|A|A|223
9H3X|1|A|U|224
*
9H3X|1|A|A|231
9H3X|1|A|G|232
9H3X|1|A|A|233
9H3X|1|A|U|234
9H3X|1|A|U|235
*
9H3X|1|A|A|262
9H3X|1|A|G|263
9H3X|1|A|C|264
9H3X|1|A|A|265
9H3X|1|A|G|266
*
9H3X|1|A|C|426
9H3X|1|A|U|427
9H3X|1|A|A|428
9H3X|1|A|A|429
9H3X|1|A|A|430
9H3X|1|A|U|431
9H3X|1|A|A|432
9H3X|1|A|C|433

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34