J6_9HA1_001

3D structure

PDB id

9HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_(L22)- precursor states supplemented with Api137 - Canonical PET exit Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

GG*CGAAC*GAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

35 nucleotides

Bulged bases

9HA1|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HA1|1|A|G|45
9HA1|1|A|G|46
*
9HA1|1|A|C|179
9HA1|1|A|G|180
9HA1|1|A|A|181
9HA1|1|A|A|182
9HA1|1|A|C|183
*
9HA1|1|A|G|215
9HA1|1|A|A|216
9HA1|1|A|A|217
9HA1|1|A|A|218
9HA1|1|A|A|219
9HA1|1|A|G|220
9HA1|1|A|A|221
9HA1|1|A|A|222
9HA1|1|A|A|223
9HA1|1|A|U|224
*
9HA1|1|A|A|231
9HA1|1|A|G|232
9HA1|1|A|A|233
9HA1|1|A|U|234
9HA1|1|A|U|235
*
9HA1|1|A|A|262
9HA1|1|A|G|263
9HA1|1|A|C|264
9HA1|1|A|A|265
9HA1|1|A|G|266
*
9HA1|1|A|C|426
9HA1|1|A|U|427
9HA1|1|A|A|428
9HA1|1|A|A|429
9HA1|1|A|A|430
9HA1|1|A|U|431
9HA1|1|A|A|432
9HA1|1|A|C|433

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34