J6_9IOT_001

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9IOT|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9IOT|1|A|G|45
9IOT|1|A|G|46
*
9IOT|1|A|C|179
9IOT|1|A|G|180
9IOT|1|A|A|181
9IOT|1|A|A|182
9IOT|1|A|C|183
*
9IOT|1|A|G|214
9IOT|1|A|G|215
9IOT|1|A|A|216
9IOT|1|A|A|217
9IOT|1|A|A|218
9IOT|1|A|A|219
9IOT|1|A|G|220
9IOT|1|A|A|221
9IOT|1|A|A|222
9IOT|1|A|A|223
9IOT|1|A|U|224
*
9IOT|1|A|A|231
9IOT|1|A|G|232
9IOT|1|A|A|233
9IOT|1|A|U|234
9IOT|1|A|U|235
*
9IOT|1|A|A|262
9IOT|1|A|G|263
9IOT|1|A|C|264
9IOT|1|A|A|265
9IOT|1|A|G|266
*
9IOT|1|A|C|426
9IOT|1|A|U|427
9IOT|1|A|A|428
9IOT|1|A|A|429
9IOT|1|A|A|430
9IOT|1|A|U|431
9IOT|1|A|A|432
9IOT|1|A|C|433

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

50S ribosomal protein L34