J6_9JNS_001

3D structure

PDB id

9JNS (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S precursor - Erm complex (C-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAUC*GAGAUU*AGCAG*CUAAAUAC

Length

38 nucleotides

Bulged bases

9JNS|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9JNS|1|A|G|45
9JNS|1|A|G|46
*
9JNS|1|A|C|179
9JNS|1|A|G|180
9JNS|1|A|A|181
9JNS|1|A|A|182
9JNS|1|A|C|183
*
9JNS|1|A|G|214
9JNS|1|A|G|215
9JNS|1|A|A|216
9JNS|1|A|A|217
9JNS|1|A|A|218
9JNS|1|A|A|219
9JNS|1|A|G|220
9JNS|1|A|A|221
9JNS|1|A|A|222
9JNS|1|A|A|223
9JNS|1|A|U|224
9JNS|1|A|C|225
*
9JNS|1|A|G|230
9JNS|1|A|A|231
9JNS|1|A|G|232
9JNS|1|A|A|233
9JNS|1|A|U|234
9JNS|1|A|U|235
*
9JNS|1|A|A|262
9JNS|1|A|G|263
9JNS|1|A|C|264
9JNS|1|A|A|265
9JNS|1|A|G|266
*
9JNS|1|A|C|426
9JNS|1|A|U|427
9JNS|1|A|A|428
9JNS|1|A|A|429
9JNS|1|A|A|430
9JNS|1|A|U|431
9JNS|1|A|A|432
9JNS|1|A|C|433

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34